Bioinformatics for comparative proteomics / edited by Cathy H. Wu, Chuming Chen
Medverkande: Wu, Cathy H [edt] | Chen, Chuming [edt].
Materialtyp:
BokSerie: Springer protocols: ; Methods in molecular biology (Clifton, N.J.): v. 694.Förläggare: New York : Humana Press, 2011Beskrivning: xiii, 387 p. : ill., charts (some col.) ; 27 cm.ISBN: 9781607619765 (hbk.); 1-60761-976-8 (hbk.); 978-1-60761-977-2 (e-ISBN); 1-60761-977-6 (e-ISBN).Ämnen: Bioinformatik | Proteiner | Bioinformatics | ProteinsOther classification: G06F | G01N | C07K
Innehåll:
Protein bioinformatics databases and resources / Chuming Chen, Hongzhan Huang, and Cathy H. Wu -- A guide to UniProt for protein scientists / Claire O'Donovan and Rolf Apweiler -- InterPro protein classification / Jennifer McDowall and Sarah Hunter -- Reactome knowledgebase of human biological pathways and processes / Peter D'Eustachio -- eFIP : a tool for mining functional impact of phosphorylation from literature / Cecilia N. Arighi ... [et al.] -- A tutorial on protein ontology resources for proteomic studies / Cecilia N. Arighi -- Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase / Sona Vasudevan ... [et al.] -- Modeling mass spectrometry-based protein analysis / Jan Eriksson and David Fenyö -- Protein identification from tandem mass spectra by database searching / Nathan J. Edwards -- LC-MS data analysis for differential protein expression detection / Rency S. Varghese and Habtom W. Ressom -- Protein identification by spectral networks analysis / Nuno Bandeira -- Software pipeline and data analysis for MS/MS proteomics : the trans-proteomic pipeline / Andrew Keller and David Shteynberg -- Analysis of high-throughput ELISA microarray data / Amanda M. White, Don S. Daly, and Richard C. Zangar -- Proteomics databases and repositories / Lennart Martens -- Preparing molecular interaction data for publication / Sandra Orchard and Henning Hermjakob -- Submitting proteomics data to PRIDE using PRIDE converter / Harald Barsnes ... [et al.] -- Automated data integration and determination of posttranslational modifications with the protein inference engine / Stuart R. Jefferys and Morgan C. Giddings -- An integrated top-down and bottom-up strategy for characterization of protein isoforms and modifications / Si Wu ... [et al.] -- Phosphoproteome resource for systems biology research / Bernd Bodenmiller and Ruedi Aebersold -- Protein-centric data integration for functional analysis of comparative proteomics data / Peter B. McGarvey ... [et al.] -- Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks / Patrick May ... [et al.] -- Time series proteome profiling / Catherine A. Formolo ... [et al.].
